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Cheap Flights from Manila to Yogyakarta

Hi, I've summed up all the key info for Manila to Yogyakarta flights

Cheapest one-way

S$ 140
Scoot Wed, Nov 11

60% below next 30d avg. (S$ 352)

Cheapest return

S$ 277
Scoot Sun, Oct 4

Best time to book

September Cheapest month
July Peak month

Recommended airlines

With a lowest one-way fare of S$ 140 , travelers can expect an average price of S$ 352 for upcoming trips, while round-trip tickets start at S$ 277 . Flights to Yogyakarta can arrive at: Adisutjipto International Airport (JOG) and Yogyakarta International Airport (YIA). The most common route connects Ninoy Aquino International Airport and Yogyakarta International Airport (MNL–YIA). To secure the best rates, booking 40 days in advance is recommended, and the cheapest travel days are Tuesday, Wednesday, and Saturday .

Updated 4d ago · This content is an AI-powered summary based on Trip.com data. Prices and availability are subject to change. Please refer to actual prices, availability, and travel conditions.

Explore the cheapest one-way and round-trip flights from Manila to Yogyakarta over the next 90 days, with one-way fares from S$ 140 and round-trip from S$ 277. Based on Trip.com's latest 7-day flight data.

      • MNL 06:55
        27h 35m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sun, Oct 4 | Scoot
        YIA 18:50
        10h
        1 stop
        MNL 05:50
        Yogyakarta - Manila | Sun, Oct 11 | Scoot
        S$ 277 S$ 336
        18% off
        18% off
        S$ 336 S$ 277
      • MNL 06:55
        11h 55m
        1 stop
        YIA 17:50
        Manila - Yogyakarta | Mon, Oct 5 | Scoot
        YIA 10:30
        18h 20m
        1 stop
        MNL 05:50
        Yogyakarta - Manila | Mon, Oct 12 | Scoot
        S$ 279 S$ 336
        17% off
        17% off
        S$ 336 S$ 279
      • MNL 19:40
        23h 30m
        1 stop
        YIA 18:10
        Manila - Yogyakarta | Sat, Oct 24 | Scoot
        YIA 19:10
        22h 20m
        1 stop
        MNL 18:30
        Yogyakarta - Manila | Thu, Oct 29 | Scoot
        S$ 279 S$ 336
        17% off
        17% off
        S$ 336 S$ 279
      • MNL 06:30
        12h 40m
        1 stop
        YIA 18:10
        Manila - Yogyakarta | Thu, Nov 12 | Scoot
        YIA 19:10
        9h 20m
        1 stop
        MNL 05:30
        Yogyakarta - Manila | Mon, Nov 16 | Scoot
        S$ 292
        13% off
        S$ 336 S$ 292
      • MNL 06:30
        28h
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Mon, Oct 26 | Scoot
        YIA 19:10
        22h 20m
        1 stop
        MNL 18:30
        Yogyakarta - Manila | Thu, Oct 29 | Scoot
        S$ 293
        13% off
        S$ 336 S$ 293
      • MNL 06:30
        12h 40m
        1 stop
        YIA 18:10
        Manila - Yogyakarta | Sun, Nov 1 | Scoot
        YIA 19:10
        22h 20m
        1 stop
        MNL 18:30
        Yogyakarta - Manila | Thu, Nov 5 | Scoot
        S$ 296
        12% off
        S$ 336 S$ 296
      • MNL 19:40
        14h 50m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sat, Oct 17 | Scoot
        YIA 10:30
        18h 20m
        1 stop
        MNL 05:50
        Yogyakarta - Manila | Tue, Oct 20 | Scoot
        S$ 313
        7% off
        S$ 336 S$ 313
      • MNL 06:55
        11h 55m
        1 stop
        YIA 17:50
        Manila - Yogyakarta | Mon, Oct 19 | Scoot
        YIA 19:10
        22h 20m
        1 stop
        MNL 18:30
        Yogyakarta - Manila | Mon, Oct 26 | Scoot
        S$ 314
        7% off
        S$ 336 S$ 314
      • MNL 06:55
        27h 35m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sun, Oct 18 | Scoot
        YIA 10:30
        18h
        1 stop
        MNL 05:30
        Yogyakarta - Manila | Sat, Oct 24 | Scoot
        S$ 314
        7% off
        S$ 336 S$ 314
      • MNL 19:40
        14h 50m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Tue, Oct 6 | Scoot
        YIA 10:30
        18h 20m
        1 stop
        MNL 05:50
        Yogyakarta - Manila | Fri, Oct 9 | Scoot
        S$ 315
        6% off
        S$ 336 S$ 315
      • MNL 13:00
        17h 25m
        1 stop
        JOG 14:00
        Manila - Yogyakarta | Tue, Sep 15 | Normal Airline
        JOG 15:00
        6h
        Direct
        MNL 16:00
        Yogyakarta - Manila | Thu, Sep 17 | Normal Airline
        Find more flights
        Find more flights
      • MNL 06:30
        28h
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Wed, Nov 11 | Scoot
        S$ 140 S$ 154
        9% off
        9% off
        S$ 154 S$ 140
      • MNL 06:55
        27h 35m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Tue, Oct 20 | Scoot
        S$ 140 S$ 154
        9% off
        9% off
        S$ 154 S$ 140
      • MNL 19:40
        14h 50m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sat, Oct 10 | Scoot
        S$ 141 S$ 154
        8% off
        8% off
        S$ 154 S$ 141
      • MNL 06:30
        27h 50m
        1 stop
        YIA 09:20
        Manila - Yogyakarta | Sun, Oct 25 | Scoot
        S$ 142
        8% off
        S$ 154 S$ 142
      • MNL 06:55
        27h 35m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Fri, Oct 23 | Scoot
        S$ 142
        8% off
        S$ 154 S$ 142
      • MNL 06:55
        27h 35m
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sun, Oct 18 | Scoot
        S$ 142
        8% off
        S$ 154 S$ 142
      • MNL 06:30
        27h 50m
        1 stop
        YIA 09:20
        Manila - Yogyakarta | Mon, Nov 2 | Scoot
        S$ 142
        8% off
        S$ 154 S$ 142
      • MNL 19:40
        23h 30m
        1 stop
        YIA 18:10
        Manila - Yogyakarta | Sat, Oct 24 | Scoot
        S$ 142
        8% off
        S$ 154 S$ 142
      • MNL 19:30
        15h
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Mon, Nov 9 | Scoot
        S$ 144
        6% off
        S$ 154 S$ 144
      • MNL 19:30
        15h
        1 stop
        YIA 09:30
        Manila - Yogyakarta | Sat, Nov 7 | Scoot
        S$ 144
        6% off
        S$ 154 S$ 144
      • MNL 13:00
        17h 25m
        1 stop
        JOG 14:00
        Manila - Yogyakarta | Tue, Sep 15 | Normal Airline
        Find more flights
        Find more flights

Which airlines are the most popular for Manila to Yogyakarta flights?

You can choose from 1 airlines that fly from Manila to Yogyakarta, including Batik Air, Scoot offers the lowest prices on this route.
Batik Air logo Batik Air
Airlines are determined based on actual purchased flight tickets from Manila to Yogyakarta according to previous 12 months data from Trip.com.

Flying from Manila to Yogyakarta

The distance between Manila and Yogyakarta is approximately 2,741.19km. Based on Trip.com's data, travel demand peaks in July. The off-season for travel is September.

Cheapest one-way flight price S$ 140
Cheapest return ticket price S$ 277
Off-season for travel September
Peak season for travel July
Flight distance 2,741.19km
Popular airline Batik Air
Flight statistics for the Manila–Yogyakarta route are based on aggregated booking data from Trip.com over the past 12 months.

Trip.com Price Insights on Flights from Manila to Yogyakarta.

What is the cheapest month for one-way flights from Manila to Yogyakarta?

The average price of one-way flights from Manila to Yogyakarta purchased by Trip.com users by month over the past 12 months.

Based on Trip.com’s data, the cheapest month for flights from Manila to Yogyakarta is February, with an average price of S$ 210, and the most expensive month is June, with an average price of up to S$ 392.

S$ 392
S$ 301
S$ 210
S$ 119
    Cheapest
  • S$ 225
    Sep
  • S$ 263
    Oct
  • S$ 316
    Nov
  • S$ 380
    Dec
  • S$ 273
    Jan
  • S$ 210
    Feb
  • S$ 326
    Mar
  • S$ 291
    Apr
  • S$ 326
    May
  • S$ 392
    Jun
  • S$ 383
    Jul
  • S$ 358
    Aug

Frequently Asked Questions

  • Which airlines offer the cheapest flights from Manila to Yogyakarta?

    Based on Trip.com data, Scoot offers Cheapest nonstop one-way flights from S$ 140 (for example, MNL–YIA on Wed, Nov 11). For a Cheapest nonstop return flight, Scoot offers fares from S$ 277, departing on Sun, Oct 4 and returning on Sun, Oct 11.
  • At the moment, you can catch a direct flight from Manila to Yogyakarta with the following airlines, including: Batik Air Selected airlines are based on historical data collected from flight bookings users made on Trip.com within the last 90 days.
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Manila to Yogyakarta is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • Here are some tips for finding the best flight deals from Manila to Yogyakarta on Trip.com:
    · Be flexible with your travel dates. The cheapest flight is currently on Wed, Nov 11, with one-way fares from just S$ 140.
    · Compare airlines. Scoot currently offers the lowest fares on this route.
    · Set up a price alert to track fare changes without searching every day.
    · Check Trip.com regularly for flight deals and available promo codes.
    · Avoid peak season or book early. July is generally the busiest month for travel to Yogyakarta.
    · Get exclusive promo codes on the Trip.com app.
  • The cheapest month to book a flight from Manila to Yogyakarta is usually September, when demand is lower.
  • After crunching the numbers on our September flight calendar, it's currently cheapest to fly from Manila to Yogyakarta on September 27, 2026 with Scoot, with prices starting at S$ 139.
  • Flights to Yogyakarta can arrive at: Adisutjipto International Airport (JOG) and Yogyakarta International Airport (YIA). The most common route connects Ninoy Aquino International Airport and Yogyakarta International Airport (MNL–YIA).
  • The time difference between Yogyakarta and Manila is 1h.
  • Tickets can only be changed or cancelled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.
  • Based on Trip.com data for flights departing in the next 30 days, the average one-way fare from Manila to Yogyakarta is S$ 352. Fares vary by travel date, airline and availability.
  • Enter Manila and Yogyakarta, choose your travel dates and passengers, then compare flights by price, duration and baggage. Select a fare, review the change and cancellation rules, enter traveller details and complete payment to receive your confirmation.
  • Scoot and AirAsia Berhadare the most popular budget airlines flying from Manila to Yogyakarta. Check baggage, seat and payment fees before comparing the final price.

Find Cheap Flights & Deals on Trip.com

Note: Prices shown on this page are the lowest estimated prices found in the last 24 hours and include all taxes and fees.

Book with no extra fees

Prices displayed on this page are all-inclusive (incl. taxes, fuel surcharges, Civil Aviation Development Fund, etc.), and all fees are shown before payment. Charges for checked baggage, meals, Wi-Fi, and other optional services may also appear in the flight cards.

Real-time pricing updates

Prices, availability, and travel information on this page have been updated within the last 24 hours, and with many routes refreshed in real time. The more popular the route, the more accurate the data.

Change & Cancellation Policy

Trip.com shows the change and cancellation rules for each ticket during the booking process, including all related fees and conditions. Please refer to the following scenarios:
Voluntary cancellation/change:
To request a change or cancellation, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and flight segment, and submit your request. Please note that additional charges may apply based on the airline’s fare rules.
Cancellation/change due to a flight schedule change:
If your flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For full details of change and cancellation policies, please refer to the customer support pages.