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Cheap Flights from Manila to El Nido

Popular airlines from Manila to El Nido

Choose from 1 carriers that fly from Manila to El Nido, including AirSWIFT AirLine, Enjoy the cheapest tickets on this route with AirSWIFT AirLine.

Find direct flights from Manila to El Nido within the next three months. Book one-way flights from S$ 154 or return tickets from S$ 165.

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

Flying from Manila to El Nido

The distance between Manila and El Nido is about 407.3km. It takes around 1 hour 31 minutes on average to fly from Manila to El Nido. The most popular month to El Nido is July. The off-season for travel is November.

Cheapest one-way flight priceS$ 154
Cheapest return ticket priceS$ 165
Off-season for travelNovember
Peak season for travelJuly
Flight distance407.3km
Average flight time1 hour 31 minutes
Popular airlineAirSWIFT AirLine

Cheapest time to fly from Manila to El Nido

The cheapest time for Manila to El Nido flights: Jan 18 to Jan 25 — one way flight prices from S$ 124.

Cheapest flights
From price
Search
  • 29
  • 916
  • 1623
  • 2330
  • Dec

    307
  • 714
  • 1421
  • 2128
  • Jan

    284
  • 411
  • 1118
  • 1825
Displayed prices are calculated based on the lowest average weekly prices of the corresponding route on Trip.com.

Frequently Asked Questions

  • Which airlines offer direct flights from Manila to El Nido?

    At the moment, you can catch a direct flight from Manila to El Nido with the following airlines, including: AirSWIFT AirLine Selected airlines are based on historical data collected from flight bookings users made on Trip.com within the last 90 days.
  • It takes about 1 hour 31 minutes to fly from Manila (MNL) to El Nido (ENI).
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Manila to El Nido is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • Based on Trip.com data in the past 4 weeks, there is 35 flight per week flying from Manila to El Nido. You can check the weekly schedule for popular airlines on this route below: AirSWIFT AirLine: S/M/T/W/T/F/S -- T65176 (10:25) AirSWIFT AirLine: S/M/T/W/T/F/S -- T65110 (04:52) AirSWIFT AirLine: S/M/T/W/T/F/S -- T65112 (05:40)
  • The cheapest months to fly from Manila to El Nido is November, when demand for travel is lower.
  • After crunching the numbers on our November flight calendar, it's currently cheapest to fly from Manila to El Nido on November 13, 2025 with AirSWIFT AirLine, with prices starting at S$ 159.
  • You can land at any one of the following hubs in El Nido, with Ninoy Aquino International Airport to El Nido Airport (MNL-ENI) is by far the most common option on this route: El Nido Airport (ENI).
  • The time difference between El Nido and Manila is 0h.
  • Tickets can only be changed or cancelled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.